diff --git a/apps/api/src/modules/mcp/presentation/__tests__/mcp-transport.controller.spec.ts b/apps/api/src/modules/mcp/presentation/__tests__/mcp-transport.controller.spec.ts
index e6ca2ec..63b3b11 100644
--- a/apps/api/src/modules/mcp/presentation/__tests__/mcp-transport.controller.spec.ts
+++ b/apps/api/src/modules/mcp/presentation/__tests__/mcp-transport.controller.spec.ts
@@ -28,6 +28,41 @@ describe('McpTransportController', () => {
     controller = new McpTransportController(mockRegistry as any);
   });
 
+  describe('security decorators', () => {
+    it('has JwtAuthGuard applied at controller level', () => {
+      const guards = Reflect.getMetadata('__guards__', McpTransportController);
+      expect(guards).toBeDefined();
+      expect(guards).toHaveLength(1);
+      // The guard is applied via @UseGuards(JwtAuthGuard)
+      const guardNames = guards.map((g: any) => g.name || g.constructor?.name);
+      expect(guardNames).toContain('JwtAuthGuard');
+    });
+
+    it('has Throttle metadata on listServers endpoint', () => {
+      const limit = Reflect.getMetadata(
+        'THROTTLER:LIMITdefault',
+        McpTransportController.prototype.listServers,
+      );
+      expect(limit).toBe(30);
+    });
+
+    it('has Throttle metadata on handleSse endpoint with low limit', () => {
+      const limit = Reflect.getMetadata(
+        'THROTTLER:LIMITdefault',
+        McpTransportController.prototype.handleSse,
+      );
+      expect(limit).toBe(5);
+    });
+
+    it('has Throttle metadata on handleMessage endpoint', () => {
+      const limit = Reflect.getMetadata(
+        'THROTTLER:LIMITdefault',
+        McpTransportController.prototype.handleMessage,
+      );
+      expect(limit).toBe(30);
+    });
+  });
+
   describe('listServers', () => {
     it('returns list of server names from registry', () => {
       mockRegistry.getServerNames.mockReturnValue(['search', 'listings']);
@@ -82,6 +117,24 @@ describe('McpTransportController', () => {
       expect(mockServer.connect).toHaveBeenCalledOnce();
       expect(mockReq.on).toHaveBeenCalledWith('close', expect.any(Function));
     });
+
+    it('cleans up transport on connection close', async () => {
+      const mockServer = { connect: vi.fn().mockResolvedValue(undefined) };
+      mockRegistry.getServer.mockReturnValue(mockServer);
+
+      await controller.handleSse('search', mockUser as any, mockReq as any, mockRes as any);
+
+      // Simulate connection close
+      const closeHandler = mockReq.on.mock.calls[0]![1] as () => void;
+      closeHandler();
+
+      // Transport should be removed — subsequent message calls should fail
+      const msgReq = { query: { sessionId: 'mock-session-id' } } as any;
+      const msgRes = {} as any;
+      await expect(
+        controller.handleMessage('search', mockUser as any, msgReq, msgRes),
+      ).rejects.toThrow(HttpException);
+    });
   });
 
   describe('handleMessage', () => {
diff --git a/apps/api/src/modules/mcp/presentation/mcp-transport.controller.ts b/apps/api/src/modules/mcp/presentation/mcp-transport.controller.ts
index a0e6214..a1feaa3 100644
--- a/apps/api/src/modules/mcp/presentation/mcp-transport.controller.ts
+++ b/apps/api/src/modules/mcp/presentation/mcp-transport.controller.ts
@@ -11,6 +11,7 @@ import {
   UseGuards,
 } from '@nestjs/common';
 import { ApiBearerAuth, ApiOperation, ApiParam, ApiResponse, ApiTags } from '@nestjs/swagger';
+import { Throttle } from '@nestjs/throttler';
 import type { Request, Response } from 'express';
 import { JwtAuthGuard, CurrentUser, type JwtPayload } from '@modules/auth';
 
@@ -24,6 +25,7 @@ export class McpTransportController {
   constructor(private readonly registry: McpRegistryService) {}
 
   @Get('servers')
+  @Throttle({ default: { ttl: 60_000, limit: 30 } })
   @ApiOperation({ summary: 'List available MCP servers' })
   @ApiResponse({ status: 200, description: 'List of registered MCP server names' })
   @ApiResponse({ status: 401, description: 'Unauthorized' })
@@ -32,6 +34,7 @@ export class McpTransportController {
   }
 
   @Get(':serverName/sse')
+  @Throttle({ default: { ttl: 60_000, limit: 5 } })
   @ApiOperation({ summary: 'Open SSE connection to an MCP server' })
   @ApiParam({ name: 'serverName', description: 'Name of the MCP server to connect to' })
   @ApiResponse({ status: 200, description: 'SSE stream established' })
@@ -65,6 +68,7 @@ export class McpTransportController {
   }
 
   @Post(':serverName/messages')
+  @Throttle({ default: { ttl: 60_000, limit: 30 } })
   @ApiOperation({ summary: 'Send a message to an MCP server session' })
   @ApiParam({ name: 'serverName', description: 'Name of the MCP server' })
   @ApiResponse({ status: 200, description: 'Message processed' })
diff --git a/e2e/api/mcp.spec.ts b/e2e/api/mcp.spec.ts
new file mode 100644
index 0000000..c99b076
--- /dev/null
+++ b/e2e/api/mcp.spec.ts
@@ -0,0 +1,54 @@
+import { test, expect, registerUser } from '../fixtures';
+
+test.describe('MCP API — Auth Guards', () => {
+  test.describe('GET /mcp/servers', () => {
+    test('rejects unauthenticated request with 401', async ({ request }) => {
+      const res = await request.get('/mcp/servers');
+
+      expect(res.status()).toBe(401);
+    });
+
+    test('returns server list for authenticated user', async ({ request }) => {
+      const { accessToken } = await registerUser(request);
+
+      const res = await request.get('/mcp/servers', {
+        headers: { Authorization: `Bearer ${accessToken}` },
+      });
+
+      expect(res.status()).toBe(200);
+      const body = await res.json();
+      expect(body).toHaveProperty('servers');
+      expect(Array.isArray(body.servers)).toBeTruthy();
+    });
+  });
+
+  test.describe('GET /mcp/:serverName/sse', () => {
+    test('rejects unauthenticated SSE connection with 401', async ({ request }) => {
+      const res = await request.get('/mcp/search/sse');
+
+      expect(res.status()).toBe(401);
+    });
+  });
+
+  test.describe('POST /mcp/:serverName/messages', () => {
+    test('rejects unauthenticated message with 401', async ({ request }) => {
+      const res = await request.post('/mcp/search/messages', {
+        params: { sessionId: 'fake-session' },
+        data: {},
+      });
+
+      expect(res.status()).toBe(401);
+    });
+
+    test('returns 400 when sessionId is missing for authenticated user', async ({ request }) => {
+      const { accessToken } = await registerUser(request);
+
+      const res = await request.post('/mcp/search/messages', {
+        data: {},
+        headers: { Authorization: `Bearer ${accessToken}` },
+      });
+
+      expect(res.status()).toBe(400);
+    });
+  });
+});